Antonio S. Torralba
Universidad Complutense  

Chemistry

BBM1

Biophysics

 

FUNDER - Documentation


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EXECUTABLE FILES AND LIBRARY


funder

Executable file generated by make. It calculates the susceptibilities of the example system up to third order and uses them to illustrate the functional-Taylor-series approximation of the response by convoluting several signals (input flux variations) with the susceptibilities. The exact integration of the equations is also calculated.

Generates

first.dat, second.dat, third1.dat, raw.dat,

sums.dat, suscept.dat, errors.dat,

in05min.dat, out05min.dat, con05min.dat,

in2plus.dat, out2plus.dat, con2plus.dat,

in14940.dat, out14940.dat, con14940.dat,

in19930.dat, out19930.dat, con19930.dat,

in24920.dat, out24920.dat, con24920.dat


funderalt

Executable file generated by make alt_example. It reads the susceptibilities of the example system and their errors from suscept.dat and errors.dat, respectively, and uses them to illustrate the functional-Taylor-series approximation of the response by convoluting several signals (input flux variations) with the susceptibilities. The exact integration of the equations is also calculated. This executable should be use if the files suscept.dat and errors.dat are available, since the calculation of the susceptibilities can take several hours.

Generates

in05min.dat, out05min.dat, con05min.dat,

in2plus.dat, out2plus.dat, con2plus.dat,

in14940.dat, out14940.dat, con14940.dat,

in19930.dat, out19930.dat, con19930.dat,

in24920.dat, out24920.dat, con24920.dat


funderns

Executable file generated from funderns.cpp. It calculates the susceptibilities of the example system up to third order from data with additive white gaussian noise (standard deviation = 5% the value of the reference state).

Generates

The same files as funder but from noisy data. The extension of the output files is .nsd


funderlib.a

Library containing the object files of the classes Susceptibility, Signal, Response, System, IntegList, IntegListNode. Users should compile their own source files with this library as follows:


> g++ user1.cpp[ user2.cpp[...]] funderlib.a -o user_exe -lm


Object files

fdsusder.o, fdsusio.o, fdsusaux.o, fdlist.o, fdsignal.o, fdrespon.o, fdsystem.o



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Monday, 04-Mar-2013 11:58:25 CET

© 2013 Antonio Sánchez Torralba