![]() |
|
|
![]() |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FUNDER - Theoretical Background |
![]() |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
FUNCTIONAL TAYLOR SERIES EXPANSION OF A FUNCTIONAL AND SUSCEPTIBILITIES OF A SYSTEM Continuous, infinitely-derivable functions can be expanded in polynomial series, known as Taylor series. Functional derivatives make it possible to generalize this idea to functionals. The analogue of the reference point in regular series (zero in MacLaurin series) is a reference function. Hence, we define a reference state consisting of the pair of functions
These signals need not be causal. For example, the origin of times may have been shifted to minus infinity, so that they would represent an asymptotic state of a system. It is convenient to refer the excitations and responses to the reference state, so we consider, for a one-input system, the variations
and
Although it is not required, we assume from now on that the reference state is a steady state. The usual Taylor series relates finite variations of a function to finite variations of its variable. Infinitesimal variations, i.e. differentials, are related through a derivative. The functional case is completely analogous. Thus, functional derivatives connect differentials of functionals and functions [eq. (4) in the page on functional derivatives], whereas increments of functionals can be expanded in terms of increments of functions as
where causal signals are assumed and therefore the integration limits
are taken from zero to real time. The functions
Definition of the susceptibilities
Susceptibilities are
functional derivatives,
normalized by the factorial of the order,
Knowing the susceptibilities of a system, or a few of them, makes it possible to describe and predict the response of a nonlinear system without any information on its composition, internal structure and mechanism. Furthermore, eq. (4) is linear in the susceptibilities, so impulse perturbations of the reference state lead to linear algebraic equations. SUSCEPTIBILITIES AND RESPONSES TO IMPULSES A helpful way of understanding the properties of susceptibilities is discretizing them. Let us consider the simplest nonlinear case, i.e. only two time-points and two susceptibilities. The discrete first susceptibility is a matrix:
The second susceptibility is a tensor:
We reserve the first index for real time. There are only three possible impulse-perturbation experiments: 1) Perturb at the first time point 2) Perturb at the second time point 3) Perturb at both time points Let us consider them one by one, and in order. Perturbation at the first time point In this case, the variation of the excitation is
The variation of the response is
These are linear equations with two unknowns per time point,
Perturbation at the second time point Analogously, for the variation of the excitation
the response is
Again, this extracts from the susceptibilities,
eqs. (6)
and (7),
two new unknowns (per time point),
Perturbation at both time points If the excitation consists of two consecutive impulses,
the response yields equations of the form
where terms already determined from single-impulse experiments are
grouped in the left-hand member of the equation and the last two
undetermined elements of the susceptibilities (per time point),
However, in this case it is not possible to obtain the unknowns.
If the experiment is repeated for two
different variations of the excitation, labeled
which is singular, i.e. its determinant is zero. Hence, the system of equations is undetermined. To solve this problem, several properties must be taken into account, which are described below. PROPERTIES OF THE SUSCEPTIBILITIES OF BIOCHEMICAL SYSTEMS Symmetry
The most general property of susceptibilities is their symmetry.
Due to the singularity of matrix
(14),
it is not possible to determine
Furthermore, symmetrical susceptibilities are consistent with the structure of eq. (4): Permuting the perturbation times, which act as dummy variables, means relabeling them. This can be done arbitrarily without changing the meaning of the Taylor series. Causality
In causal systems,
eq. (11)
is equal to zero for
In addition,
eq. (13) for
Clearly, these ideas can be generalized for more than one time point and for higher-order susceptibilities. Therefore, as a result of causality, susceptibilities are zero before the last perturbation time. Time-invariance
Not all biochemical systems are
time-invariant.
However, for those that are, susceptibilities are redundant. This is very
helpful in reducing the amount of work required for determining them.
Consider the
above example.
One expects that the response to an
impulse
at the second time point of the discretization will be the same
as the response to an
impulse at
the first time point, but shifted (provided that
the intensity of both perturbations is also the same, say
Since this must be true for any value of
or, in general, that the value of a time-invariant susceptibility depends on the delays of all times with respect to the first impulse-perturbation time, instead of on real time. In other words, the reference time for the response of a time-invariant system is the perturbation time of the excitation, and not real time.
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
![]() |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||